Installation
The most straightforward way of installing DeepCASE is via pip
pip install deepcase
From source
If you wish to stay up to date with the latest development version, you can instead download the source code. In this case, make sure that you have all the required dependencies installed. You can clone the code from GitHub:
git clone git@github.com:Thijsvanede/deepcase.git
Next, you can install the latest version using pip:
pip install -e <path/to/DeepCASE/directory/containing/setup.py>
Dependencies
DeepCASE requires the following python packages to be installed:
Argformat: https://pypi.org/project/argformat/
Numpy: https://numpy.org
Pandas: https://pandas.pydata.org/
PyTorch: https://pytorch.org/
Scikit-learn: https://scikit-learn.org/stable/index.html
Scipy: https://www.scipy.org/
Tqdm: https://tqdm.github.io/
All dependencies should be automatically downloaded if you install DeepCASE via pip. However, should you want to install these libraries manually, you can install the dependencies using the requirements.txt file
pip install -r requirements.txt
Or you can install these libraries yourself
pip install -U argformat numpy pandas torch torchvision torchaudio scikit-learn scipy tqdm